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Fix interleave extractor

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RichardG867
2022-03-18 15:00:02 -03:00
parent 3a407699d8
commit 1c777c7a9d
1 changed files with 11 additions and 17 deletions
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28
biostools/extractors.py
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@@ -1205,24 +1205,18 @@ class InterleaveExtractor(Extractor):
sets_2 = [self._interleaved_odd, self._interleaved_even]
sets_4 = [self._interleaved_q0, self._interleaved_q2, self._interleaved_q2, self._interleaved_q3]
for part_set in (sets_2, sets_4):
# Go through base index numbers.
for base_index in range(len(part_set)):
# Remove base index from the list.
counterpart_string_sets_candidate = [counterpart_set for counterpart_set in part_set if counterpart_set != part_set[base_index]]
# Go through sets.
for counterpart_set in counterpart_string_sets_candidate:
# Go through strings.
for string in counterpart_set:
# Check if the string is present.
if string in file_header:
counterpart_string_sets = counterpart_string_sets_candidate
this_part_order = part_order
break
# Stop if a set was found.
if counterpart_string_sets:
# Go through sets.
for counterpart_set in part_set:
# Go through strings.
for string in counterpart_set:
# Check if the string is present.
if string in file_header:
# Generate new string set list without this set.
counterpart_string_sets = [new_set for new_set in part_set if new_set != counterpart_set]
this_part_order = part_order
break
# Stop if a set was found.
if counterpart_string_sets:
break
if counterpart_string_sets: